Oliver D. King
Boston Biomedical Research Institute
64 Grove Street
Watertown, MA 02472
king-at-bbri.org
2004-2007: Postdoctoral Associate, Whitehead Institute,
Lindquist Lab.
2001-2004: Postdoctoral Fellow, Harvard Medical School,
Roth Lab.
2001: PhD in Mathematics, UC Berkeley, supervised by
Richard Borcherds.
(Thesis: A mass formula for unimodular lattices with no roots)
1999: MS in Computer Science, UC Berkeley,
supervised by David Forsyth.
Publications:
- Diminishing apoptosis by deletion of Bax or overexpression of Bcl-2 does not protect against infectious prion toxicity in vivo. [© 2007 by The Society for Neuroscience]
A.D. Steele, O.D. King, W.S. Jackson, C.A. Hetz, A.W. Borkowski, P. Thielen,
R. Wollmann and S. Lindquist, Journal of Neuroscience, vol. 27, no. 47,
13022-13027 (2007).
- The evolution of bet-hedging adaptations to rare scenarios.
O.D. King and J. Masel, Theoretical Population Biology, vol. 72, no. 4, 560-575 (2007).
- The power of automated high-resolution behavior analysis
revealed by its application to mouse models of Huntington's and prion diseases. [Supplement]
A.D. Steele, W.S. Jackson, O.D. King and S. Lindquist, Proceedings of the National Academy of Sciences,
vol. 104, no. 6, 1983-1988 (2007).
- The loss of adaptive plasticity during long periods of environmental stasis.
[Appendices] [© 2007 by The University of Chicago]
J. Masel, O.D. King and H. Maughan,
American Naturalist, vol. 169, no. 1, 38-46 (2007).
- Binary templates for comma-free DNA codes.
O.D. King and P. Gaborit, Discrete Applied
Mathematics (Computational Molecular Biology Series, Issue V), vol. 155, no. 6-7, 831-839 (2007).
- Motifs, themes and thematic maps of an integrated S. cerevisiae
interaction network.
L.V. Zhang, O.D. King, S.L. Wong, D.S. Goldberg,
A.H.Y. Tong, G. Lesage, B. Andrews, H. Bussey, C. Boone and F.P. Roth,
Journal of Biology, vol. 4:6, 13pp (2005).
- Linear constructions for DNA codes.
[Tables]
P. Gaborit and O.D. King, Theoretical Computer Science, vol. 334, 99-113 (2005).
- Comment on 'Subgraphs in random
networks'.
O.D. King, Physical Review E, vol. 70, no. 5, 058101 (2004).
- Predicting genetic
interactions from genomic and proteomic data.
S.L. Wong, L.V. Zhang, A.H.Y. Tong, Z. Li, D.S. Goldberg,
O.D. King, G. Lesage,
M. Vidal, B. Andrews, H. Bussey, C. Boone and F.P. Roth, Proceedings of the National Academy of Sciences,
vol. 101, no. 44, 15682-15687 (2004).
- Predicting
co-complexed protein pairs using genomic and proteomic data
integration.
L.V. Zhang, S.L. Wong, O.D. King and F.P. Roth, BMC Bioinformatics, vol. 5:38, 15pp (2004).
- Predicting
protein complex membership
using probabilistic network reliability.
S. Asthana, O.D. King, F.D. Gibbons and F.P. Roth, Genome Research, vol. 14,
no. 6, 1170-1175 (2004).
- Intensity-based
protein identification by machine learning from a library of tandem mass
spectra.
J.E. Elias, F.D. Gibbons, O.D. King, F.P. Roth and
S.P. Gygi, Nature Biotechnology, vol. 22, no. 2, 214-219 (2004).
- Bounds for DNA codes with constant
GC-content.
O.D. King, Electronic Journal
of Combinatorics, vol. 10, no. 1, #R33 13pp (2003).
- A non-parametric model for
transcription factor
binding sites.
O.D. King and F.P. Roth, Nucleic Acids Research, vol. 31, no. 19, e116
8pp (2003).
- Characterizing
gene sets with FuncAssociate.
G.F. Berriz, O.D. King, B. Bryant, C. Sander and F.P. Roth,
Bioinformatics, vol. 19, no. 18,
2502-2504 (2003).
- Predicting phenotype from patterns of annotation.
O.D. King, J.C. Lee, A.M. Dudley, D.M. Janse, G.M. Church
and F.P. Roth,
Bioinformatics
(Intelligent Systems in Molecular Biology Proceedings Issue), vol. 19,
suppl. 1, i183-i189 (2003).
- Predicting
gene function from patterns of annotation.
O.D. King, R.E. Foulger, S.S. Dwight, J.V. White and F.P.
Roth, Genome Research, vol. 13,
no. 5, 896-904 (2003).
- GoFish
finds genes with
combinations of Gene Ontology attributes.
G.F. Berriz, J.V. White, O.D. King and F.P. Roth, Bioinformatics,
vol. 19, no. 6, 788-789 (2003).
- A mass formula for unimodular lattices with no
roots. [Table]
O.D. King, Mathematics of Computation, vol. 72, no. 242, 839-863 (2003).
- Learning
a semantic space
from user's relevance feedback for image retrieval.
X. He, O. King, W.-Y. Ma, M. Li and H.-J. Zhang,
IEEE Transactions on
Circuits and Systems for Video Technology, vol. 13, 39-48 (2003).
- The mass of extremal doubly-even self-dual
codes of length 40.
O.D. King, IEEE
Transactions on Information Theory, vol. 47, no. 6, 2558-2560 (2001).
- Estimation of singular values
of very large matrices using random sampling.
M. Kobayashi, G. Dupret, O. King and H. Samukawa, Computers and Mathematics with Applications, vol. 42, 1331-1352 (2001).
- How does CONDENSATION behave
with a finite number
of samples?
O. King and D.A. Forsyth, Proc. 6th European Conference on Computer Vision
(ECCV), Springer LNCS vol. 1842, 695-709 (2000).
- Multi-perspective
retrieval, ranking and visualization of web data.
M. Kobayashi, G. Dupret, O. King, H. Samukawa and K.
Takeda, Int. Symposium on Research, Development & Practices in Digital Libraries (ISDL),
159-162 (1999).
- On global
parametric motion estimation with illumination and lens distortion
correction.
Y. Altunbasak, A.J. Patti and O.D. King, Proc. IEEE Int. Conference on Image Processing (ICIP),
686-690 (1999).