Roth Lab Bioinformatics Resources Forum

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FuncAssociate

FuncAssociate takes a list of genes as input and produces a ranked list of the Gene Ontology terms enriched in an input list

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FuncBase

FuncBase is a website which allows browsing of computational gene function predictions for various organisms

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Synergizer

The Synergizer is a database of gene, protein, and other biological identifiers. The Synergizer web interface allows users to translate gene names from one naming scheme ("namespace") to another.

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ClusterJudge

Not sure which clustering algorithm to use with your gene expression data? ClusterJudge scores the results from any clustering algorithm, using existing annotation, so you can see which one best groups genes by function.

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ChiPper

a tool for analysis of ChIP-chip data

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General Discussion

Feel free to talk about anything and everything in this board.

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