Attributes used for random forest classifier
Reference Abbreviation Attr type
Giaever G, Flaherty P, Kumm J, Proctor M, Nislow C, Jaramillo DF, Chu AM, Jordan MI, Arkin AP, Davis RW: Chemogenomic profiling: identifying the functional interactions of small molecules in yeast. Proc Natl Acad Sci U S A 2004, 101(3):793-798. GIAEVER Phenotype
Parsons AB, Brost RL, Ding H, Li Z, Zhang C, Sheikh B, Brown GW, Kane PM, Hughes TR, Boone C: Integration of chemical-genetic and genetic interaction data links bioactive compounds to cellular target pathways. Nat Biotechnol 2004, 22(1):62-69. PARSONS Phenotype
Lum PY, Armour CD, Stepaniants SB, Cavet G, Wolf MK, Butler JS, Hinshaw JC, Garnier P, Prestwich GD, Leonardson A et al: Discovering modes of action for therapeutic compounds using a genome-wide screen of yeast heterozygotes. Cell 2004, 116(1):121-137. LUM Phenotype
Baetz K, McHardy L, Gable K, Tarling T, Reberioux D, Bryan J, Andersen RJ, Dunn T, Hieter P, Roberge M: Yeast genome-wide drug-induced haploinsufficiency screen to determine drug mode of action. Proc Natl Acad Sci U S A 2004, 101(13):4525-4530. BAETZ Phenotype
Tucker CL, Fields S: Quantitative genome-wide analysis of yeast deletion strain sensitivities to oxidative and chemical stress. Comparative and Functional Genomics 2004, 5(3):216-224. TUCKER Phenotype
Dudley AM, Janse DM, Tanay A, Shamir R, Church GM: A global view of pleiotropy and phenotypically derived gene function in yeast. Mol Syst Biol 2005, 1:2005 0001. DUDLEY Phenotype
Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, Rick JM, Michon AM, Cruciat CM et al: Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 2002, 415(6868):141-147. TAP Protein complex
Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, Adams SL, Millar A, Taylor P, Bennett K, Boutilier K et al: Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 2002, 415(6868):180-183. HO Protein complex
Ng HH, Robert F, Young RA, Struhl K: Genome-wide location and regulated recruitment of the RSC nucleosome-remodeling complex. Genes Dev 2002, 16(7):806-819. NG Protein complex and cellular localization
Robert F, Pokholok DK, Hannett NM, Rinaldi NJ, Chandy M, Rolfe A, Workman JL, Gifford DK, Young RA: Global position and recruitment of HATs and HDACs in the yeast genome. Mol Cell 2004, 16(2):199-209. ROBERT Protein complex and cellular localization
Huh WK, Falvo JV, Gerke LC, Carroll AS, Howson RW, Weissman JS, O'Shea EK: Global analysis of protein localization in budding yeast. Nature 2003, 425(6959):686-691. HUH Protein cellular localization
Kumar A, Agarwal S, Heyman JA, Matson S, Heidtman M, Piccirillo S, Umansky L, Drawid A, Jansen R, Liu Y et al: Subcellular localization of the yeast proteome. Genes Dev 2002, 16(6):707-719. KUMAR Protein cellular localization
Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW, Hannett NM, Tagne JB, Reynolds DB, Yoo J et al: Transcriptional regulatory code of a eukaryotic genome. Nature 2004, 431(7004):99-104. Harbison Transcriptional regulator
Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I et al: Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 2002, 298(5594):799-804. LEE Transcriptional regulator
Bru C, Courcelle E, Carrere S, Beausse Y, Dalmar S, Kahn D: The ProDom database of protein domain families: more emphasis on 3D. Nucleic Acids Res 2005, 33(Database issue):D212-215. ProDom Protein sequence pattern
Finn RD, Mistry J, Schuster-Bockler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R et al: Pfam: clans, web tools and services. Nucleic Acids Res 2006, 34(Database issue):D247-251. PFAM Protein sequence pattern
Selengut JD, Haft DH, Davidsen T, Ganapathy A, Gwinn-Giglio M, Nelson WC, Richter AR, White O: TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes. Nucleic Acids Res 2007, 35(Database issue):D260-264. TIGRFAMs Protein sequence pattern
Hulo N, Bairoch A, Bulliard V, Cerutti L, De Castro E, Langendijk-Genevaux PS, Pagni M, Sigrist CJ: The PROSITE database. Nucleic Acids Res 2006, 34(Database issue):D227-230. Prosite Protein sequence pattern
Mi H, Guo N, Kejariwal A, Thomas PD: PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways. Nucleic Acids Res 2007, 35(Database issue):D247-252. PANTHER Protein sequence pattern
Attwood TK: The PRINTS database: a resource for identification of protein families. Brief Bioinform 2002, 3(3):252-263. Prints Protein sequence pattern
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L et al: InterPro, progress and status in 2005. Nucleic Acids Res 2005, 33(Database issue):D201-205. INTERPRO Protein sequence pattern